Cholera Genomics Data Analysis Working Group

Collaborating across Africa to enhance genomic surveillance of Vibrio cholerae

A continent-wide initiative to co-develop pipelines, share expertise, and strengthen public health response through genomic insights.

Explore Objectives Meet the Team

Our Core Objectives

Platform Compilation

Review and integrate bioinformatics tools used for cholera genomics.

Identify Gaps

Highlight barriers to using genomic platforms in African settings.

Decision Support

Develop a guide to help users select appropriate genomic tools.

User-Friendly Guides

Create accessible SOPs and walkthroughs for using genomic pipelines.

Innovative Platform

Reimagine and propose a next-gen cholera genomics analysis platform.

Collaborative Network

Build a network of African scientists to share knowledge and resources.

Cholera Genomics Workflow

Steps for Vibrio cholerae Genomic Analysis

De novo Assembly

Genome Annotation

AMR Gene Profiling

MLST Classification

Phylogenetic Tree

Virulence Gene Detection

Lineage Assignment

Comparative Genomics

Data Visualization

Latest News

Building the Cholera Genomics Data Analysis Working Group

CGDAW continues to take shape through a series of structured stakeholder engagements. At the most recent information session, held on 10 July 2025, participants received key updates on structure, training, infrastructure, and collaboration plans.

Thu, Jul 10 2025